Mock Bredenberg Lab Research

Department of Bioengineering

The Bredenberg Lab

Computational mechanisms of learning

 Research in the Bredenberg Lab

It remains a puzzle how the brain builds sensory representations and learns complex tasks so effectively, even though each of its trillions of synapses adjusts itself with only limited information about what's happening elsewhere in the brain. We think machine learning could help us solve this mystery, because it can connect small-scale synaptic changes to large-scale learning outcomes through mathematical principles. Work in our lab revolves around creating, improving and testing theoretical models inspired by machine learning to help us understand the computational mechanisms of learning in the brain.

Improving the performance and realism of biological learning models
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While many models exist that seek to describe how the brain could learn to build sensory representations or learn from reinforcement using synaptic plasticity, most of these models do not perform nearly as well as state-of-the-art machine learning methods.

We are working improve the performance and realism of biological learning models by to extracting computational motifs from our knowledge of low-level cortical information processing, to incorporate into neural networks whose architecture will synergize effectively with models of biological learning. 

 

Statistically quantifying learning in representations and behavioR

In recent years, numerous statistical tools have been developed to jointly characterize neural representations and behavior in terms of low-dimensional manifolds and dynamics; however, there is a comparative absence of similar techniques that describe learning-induced changes in the brain.

Our lab is working to create approaches to statistically quantify learning in neural representations and behavior. 

To do this, we collaborate with experimental neuroscientists to develop novel statistical methods to characterize the neural basis of learning in naturalistic environments, using a spectrum of approaches, from simple, interpretable methods to powerful deep learning-driven decoding approaches, ranging from linear tensor decompositions, to dynamical similarity metrics, to hierarchical, nonlinear state-space methods.

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Testing models of learning in the brain in clinically relevant contexts
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We aim to generate testable predictions that can distinguish candidate models from their alternatives. To do this, we have collaboration with Allen Institute for Brain Science to test candidate models for how mice learn to control brain-computer interfaces (BCIs). We are also collaborating with experimental neuroscientists to explore whether underlying classical psychedelic-induced hallucinations and dream generation are one and the same.

Collaborations

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The Allen Institute

 

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The Murray Lab

 

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Featured Publications

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2026

Modeling the hallucinatory effects of classical psychedelics in terms of replay-dependent plasticity mechanisms

eLife

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Brain

2024

Recurrent Neural Circuits Overcome Partial Inactivation by Compensation and Re-learning

Journal of Neuroscience

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The Bredenberg Lab 

Founded in 2026, the Bredenberg Lab is a theoretical neuroscience research group within the University of Oregon's Phil and Penny Knight Campus for Accelerating Scientific Impact. Based in the Department of Bioengineering in Eugene, Oregon, the Bredenberg Lab works to understand the computational mechanisms of learning in the brain.